This systematic review examined the current state of conceptualization and specification of data quality and the role of ontology based approaches to develop data quality based on "fitness for purpose" within the health context. A literature review was conducted of all English language studies, from January 2000-March 2013, which addressed data/information quality, fitness for purpose of data, used and implemented ontology-based approaches. Included papers were critically appraised with a "context-mechanism-impacts/outcomes" overlay. We screened 315 papers, excluded 36 duplicates, 182 on abstract review and 46 on full-text review; leaving 52 papers for critical appraisal. Six papers conceptualized data quality within the "fitness for purpose" definition. While most agree with a multidimensional definition of DQ, there is little consensus on a conceptual framework. We found no reports of systematic and comprehensive ontological approaches to DQ based on fitness for purpose or use. However, 16 papers used ontology-specified implementations in DQ improvement, with most of them focusing on some dimensions of DQ such as completeness, accuracy, correctness, consistency and timeliness. The majority of papers described the processes of the development of DQ in various information systems. There were few evaluative studies, including any comparing ontological with non-ontological approaches, on the assessment of clinical data quality and the performance of the application.
Keywords
Data qualityFitness for purposeData modelOntology development methodology
Background
The growing use of electronic health records (EHRs) raises issues of semantic interoperability and the quality management/improvement of large datasets derived from multiple EHRs. Improved data quality in EHRs can improve the quality of decisions and lead to better policy that actually meet needs, strategies, evidence-based care and patient outcomes.
The acceptable level of data quality is not fixed in the system. Rather health professionals can provide it at different times and data users need to assess that quality contextually, based on the fitness for research, audit and quality assurance purposes (Devillers et al.
2007). It is important to take a user view point of quality because it is the end user who evaluate whether or not data is fit for use. A focus is the quality of patient or disease registers derived from EHRs to support policy and practice. Patients registers need to have a level of completeness and the information contained, need a level of correctness and consistency to be useful for clinical, quality improvement and research purposes (Liaw et al.
2011).
DQ was conceptualised in terms of its "fitness for purpose/use" in a few papers (Wang
1998; Wang et al.
1996). DQ can be described from two perspectives: (1) intrinsic quality of data elements and set of data elements (data set) and (2) how the set meets the user’s needs i.e. fitness for purpose. The commonly approved definition of DQ has been epitomized in the International Standards Organisation definition: "the totality of features and characteristics of an entity that bears on its ability to satisfy stated and implied needs" (ISO 8402-1986, Quality Vocabulary). DQ also can be specified in terms of its "fitness for purpose/use" (Wang
1998; Wang et al.
1996).
Intrinsic DQ refers to the extent that data is free of defects as measured by specific DQ dimensions, including "accuracy, perfection, freshness and uniformity" (Redman
2005) and "completeness, unambiguity, meaningless and correctness" (Choquet et al.
2010; Orme et al.
2007; Wand and Wang
1996; Yao et al.
2005). The Canadian Institute for Health Information recommendations were the basis for an information quality framework comprising 69 quality criteria grouped into 24 quality characteristics, which was further grouped into 6 quality dimensions: accuracy, timeliness, comparability, usability, relevance and privacy & security (Kerr et al.
2007). Research in DQ has tended to focus on the identification of generic quality characteristics such as accuracy, currency and completeness (Orme et al.
2007; Wang et al.
1996) or completeness, correctness, consistency and timeliness (Liaw et al.
2011) as core dimensions of DQ that are relevant across application domains. However, our pervious review shows there is a lack of consensus conceptual framework and definition for DQ (Liaw et al.
2013).
Many studies regularly report a range of deficiencies in the collected information for professional practice (Devillers et al.
2007; Kahn et al.
2002), clinical (Azaouagh and Stausberg
2008; de Lusignan et al.
2010; Mitchell and Westerduin
2008; Moro and Morsillo
2004) and health promotion (Gillies
2000b) purposes. Similar deficiencies exist with information in geographic (Devillers et al.
2007; Ivanova et al.
2013), hospital and general practice (Liaw et al.
2012) information systems, where the lack of coding rules meant that much of the data are often incomplete or in relatively inaccessible text format. The evidence is more encouraging for data for administrative purposes (Lain et al.
2008; Quan et al.
2008). Hybrid record keeping systems in primary care are believed to be more complete than computer-only or paper-only systems (Hamilton et al.
2003).
Relational database models have been prevalent in last few decades, enabling information to be efficiently stored and required within a hierarchical database architecture. On the other hand, ontologies, usually with non-hierarchical databases, have been used in applications that required more flexibility in capturing more semantic meanings. However, there is no well-documented evidence or experiments that suggest that one is better than the other in terms of outputs, data quality and fitness for purpose.
In contrast to our previous review (Liaw et al.
2013), this systematic review will examine the breadth and depth of research into the conceptualization of data quality based on the "fitness for purpose" paradigm, methodologies to specify data quality for implementation, some advantages of ontology-based approaches to develop data quality, and semantic interoperability. This study aims to examine the role of ontology-based approaches to develop data quality based on "fitness for purpose" whereas the previous review focused on data quality as a general concept in health context. This study was broader in the databases searched and the search terms and produced results built on the previous literature review (Liaw et al.
2013) to address the following questions:
1.
How is data quality being conceptualized within the "fitness for purpose" definition for a range of uses?
2.
What specification methodologies are being used to specify data quality for implementation?
3.
What ontology-specified implementations are being used and how do they compare with other methods? and
4.
How is the impact of implementing ontology-based specifications for data quality in chronic disease management being measured and evaluated?
Methods
A literature review was conducted of all English language studies, from January 2000-March 2013, which addressed data/information quality, fitness for purpose, used ontology-based approaches and involved healthcare/chronic disease. Inclusion criteria were: (a) conceptualises data quality based on "fitness for purpose"; (b) formal methodologies used to specify data quality for implementation; (c) involved some form of data models and ontologies to improve quality of clinical data in EHRs and patient registers; and (d) used data models and ontology-based approaches in CDM. These papers were screened by title and abstract content for inclusion. The references of the included papers were hand-searched for other eligible papers.
Included papers were critically appraised with a "context-mechanism-impacts/outcomes" framework. Appraised papers were summarized using specifically developed templates and discussed to achieve the final consensus on how it addressed the review questions. The conceptual framework developed for the literature review included:
Context: integrated CDM, evidence based practice, evidence-based policy patient or disease registers, "decision analytics";
Mechanisms: methods to assess and manage quality of the register/EHR and data quality based on "fitness for purpose", ontology-based approaches;
Impacts/outcomes: Measurable impacts outcomes based on improved quality of the register, data quality, "fitness for purpose", "decision analytics".
The search strategy and keywords were organised around the three broad concepts:
Context: Diseases (chronic diseases, chronic illnesses, chronic disease management, chronic illness management, electronic health records (EHRs), registers);
Mechanisms: Data models and ontology (ontological based models, ontology approaches, ontology based multi agent systems (OBMAS), and ontological framework);
Impacts: Data Quality (data quality, information quality, data quality management, data quality assessment, quality of register, fitness for purpose).
The search was repeated three times with the following phrases:
(data quality OR information quality) AND ("fitness for purpose" OR "fitness for use") AND (quality of register* OR quality of electronic health records) AND (decision analytics) in Title, Abstract or Keywords, Subject or MESH
(ontology OR data model*) in Title, Abstract or Keywords, Subject or MESH AND (data quality OR information quality OR quality of register) in Title, Abstract or Keywords, Subject or MESH AND (fitness for purpose OR fitness for use) AND (decision analytics) in Title, Abstract or Keywords, Subject or MESH
((ontology AND traditional data model*) in Title, Abstract or Keywords, Subject or MESH OR (ontology AND SQL) in Title, Abstract or Keywords, Subject or MESH) AND (chronic diseases OR chronic illnesses) in Title, Abstract or Keywords, Subject or MESH AND (data quality OR information quality OR quality of register) in Title, Abstract or Keywords, Subject or MESH.
The initial screening of the articles was based on their abstracts. AR read all abstracts independently and studies without electronic abstracts were excluded. Selection of relevant articles was based on the information obtained from the abstracts and was agreed upon in discussion with co-authors. In the case of differences, the original paper was obtained and agreement was achieved after it was read. We hand-searched the references of the included papers to ensure completeness of the search. Papers that satisfied the inclusion criteria were independently examined by authors and any disagreements resolved by consensus. AR appraised all 52 papers using the realist "context-mechanism-impacts/outcomes" approach using extraction template (see Additional file
1: Figure S1).
The template kept the extracted information consistent and focused on the analysis and synthesis of the literature review by study types, methods, tools, outputs and impacts in terms of: requirements analysis, design and tools development, implementation, deployment and testing, evaluation: descriptive evaluation, comparative and/or contemporary control. The quality appraisal uses traditional methods of critical appraisal for validity (internal and external), reliability, generalizability and relevance of the research methods, tools and measurements. We also classified a paper as having addressed "fitness for purpose" if it a) defined a purpose for the project or dataset and b) assessed whether the data or dataset was fit for the specified purpose.
Results
The main medical, computer and business sciences online databases were searched: MEDLINE (67 papers), the Cochrane Library (18 papers), ISI Web of Knowledge (35 papers), Science Direct (75 papers), Scopus (76 papers), IEEE Xplore (25 papers), and Springer (19 papers). All search strategies have been expanded in the following business databases consisting of (Emerald Fulltext, Business Source Premier, Biotechnology and Bioengineering Abstracts, British Humanities Index: BHI, Proquest Asian Business and Reference) to find more business analytics papers however the result demonstrated insufficient studies and no more paper in this area. Table 1 summarised the sources of the 315 papers found.
Table 1
Online databases used and papers found
Database
Subjects
Field
Document type
# papers
Pubmed
Medicine, Health Science, Medical Informatics and Bioinformatics
Title, Mesh and Abstract
Journal articles and Proceeding
67
Cochrane Central Databases
Medicine and Health Science
Title, Mesh and Abstract
Journal articles
18
ISI Web of Sciences
Computer Science, Information Technology, Medical Informatics, Bioinformatics and Health Science
Title, Subject and Abstract
Journal articles
35
ScienceDirect
Computer Science, Medical Informatics, Engineering,
All fields
Journal articles
75
Decision Science, Engineering, Mathematics, Psychology, Social Sciences, and Medicine
Scopus
Computer Science, Health Science, Medical Informatics, Bioinformatics, Information Technology, Psychology,
Al fields
Journal articles
76
Social and Behavioural Sciences
IEEE Xplore
Computing and Processing, Medical Informatics, Bioinformatics, Communication Networking and Cybernetics
Title, Subject and Abstract
Journal articles
25
SpringerLink
Computer Science, Medical Informatics, Bioinformatics, information science and Engineering
Title, Subject and Abstract
Journal articles
19
Business data bases
Emerald Full text, Business Source Premier, Biotechnology and Bioengineering Abstracts, British Humanities Index: BHI, Proquest Asian Business and Reference
Title, Subject and Abstract
Journal articles
0
Total
315
In the first iteration, searches using a combination of keywords and controlled vocabulary term searches (specifically in Titles and Subjects fields of all papers) were conducted. The application of Titles and Subjects fields in a user’s search strategy and search limitation in each database has been shown to increase relevance, precision and recall (McJunkin
1995). We screened 315 papers, excluded 36 duplicates, 182 on abstract review and 46 on full-text review; leaving 52 papers for critical appraisal. Of these 6 papers conceptualized data quality within the fitness for purpose definition for a range of uses, 16 used a defined process to specify data quality for implementation, 2 papers used the ontology-specified implementation in DQ improvement compare with other non-ontological approaches, and 28 demonstrated how the impact of implementing ontology-based specifications for data quality in chronic disease management is being measured and evaluated.
It can be seen from the results of the field of publications in Table 1 that 85 papers (26.98%) in the medicine and health areas, 44 papers (13.97%) in computer and IT sciences and also 186 papers (59.05%) in the multi-disciplinary areas which is significantly more than the other two groups.
Figure 1 shows how other eligible papers were included in the second iteration using hand-searching process. The references were retrieved from the papers included in the first iteration. The keywords of references that matched with the search keywords were chosen. Based on their title, keywords, abstract and full text, 7 papers were included from the hand-searching.
Figure 1
Paper selection process.
It can be seen from the data in Table 2 that most of the papers (54%) show the various roles and impacts of ontology based approaches in CDM and how those approaches can be evaluated.
Table 2
Distribution of papers by review questions
Review questions
Number
%
1. How is data quality being conceptualized within the "fitness for purpose" definition for a range of uses?
6
12%
2. What specification methodologies are being used to specify data quality for implementation?
16
31%
3. What ontology-specified implementations are being used and how do they compare with other methods?
2
4%
4. How is the impact of implementing ontology-based specifications for data quality in chronic disease management being measured and evaluated?
28
54%
Note: Total papers >52 because each paper may be classified as two or more study types, or may address two or more review questions.
Table 3 presents the analysis of papers by study type and how they contributed to the review questions. The majority (83%) of studies involved design and tools development; 38% implemented/deployed and tested implementations; and 20% conducted a descriptive evaluation. A considerable number of studies (42 papers) demonstrate that the ontological approach was used to address semantic interoperability, data linkage, data integration, remote patient monitoring and reduce complexity of information models and networks. The majority of ontology-specified implementations in this category did not compare the performances and processes between ontology and non-ontology approaches. There were few attempts to conceptualize data quality based on "fitness for purpose" definition in a range of uses and purposes.
Table 3
Distribution of papers by study types and review questions
Study type
Study type
Review questions
Q1
Q2
Q3
Q4
n
%
n
%
n
%
n
%
n
%
1. Formal requirements analysis e.g. literature reviews, qualitative research
29
34%
4
5%
10
12%
9
11%
36
43%
2. Design & tools development: including data/information models & ontologies
69
83%
4
5%
4
5%
13
15.5%
41
49%
3. Implementation, deployment and testing of information systems
32
38%
2
2.5%
3
3.5%
5
6%
22
26.5%
4. Evaluation: descriptive evaluation of DQ or ontology in health area
17
20%
1
1%
2
2.5%
2
2.5%
12
14.5%
5. Evaluation: comparative +/- contemporary control (e.g. RCT)
2
2.5%
0
0
0
0
1
1%
1
1%
Figure 2 shows an increase in papers on ontology in CDM and DQ from 2006. There is an increase in studies reporting on the use of "fitness for purpose" when dealing with data quality from 2010 (probably started with the small spike in 2007). This suggests that researchers may be starting to take a more realistic approach to the quality of "big data": the intrinsic data quality is important but it does not need to be prefect to be "fit for purpose".
Figure 2
Distribution of papers from each category by year.
Figure 3 gives a breakdown of the frequency of the studies conducted in different continents 2006 based on the setting of the studies. Europe is the most profile with 42.6% of the authors affiliated with European universities and institutions. North America is next with 21.3% of the studies followed by Oceania (18%), Asia (13.1%), South America (3.3%) and Africa with 1.7%. Although a paper being affiliated to a particular university in a country does not necessarily mean that the context under study has been in the same country or even continent, it might provide insights to a limited extent. For example, data quality research and ontological frameworks proposed seem to be much higher in the European countries. That might be because of a greater concern with DQ and/or ontologies in Europe. North America, Oceania and Asia stand in the second, third and fourth spot after Europe in terms of the number of studies that have been conducted. South America and Africa have a relatively lower rate of papers than the other continents, which is consistent with the general trends. The distribution of papers by continent might suggest that the topic has grabbed the attention of academics as well as health professionals as a major concern for patients registers.
Figure 3
Distribution of papers found by continent.
The drivers of ontological approaches for DQ and/or CDM include better software for: (1) quality of care and/or health care issues and (2) the description, assessment and management of DQ in health (e.g. role of clinical guidelines in DQ, effects of quality of information in CISs and networking, defining and describing various attributes of DQ) as well as individual dimensions of DQ (e.g. accuracy, completeness, correctness, and consistency).
Conceptualization of data quality within the "fitness for purpose" paradigm
Table 4 shows a few studies have conceptualized and implemented data quality based on the "fitness for purpose" definition in their data models for a range of uses in health and non-health areas including improved searches for spatial data resources, including in languages other than English (Ivanova et al.
2013), support expert users in the assessment of the fitness for purpose of a given dataset (Devillers et al.
2007), better decision making (Chen
2009), support analyses in comparative effectiveness research (Kahn et al.
2012), support agents to choose how much information to gather (Chen
2009), and for research and clinical purposes (Liaw et al.
2011).
Table 4
Papers where data quality was conceptualized within fitness for purpose paradigm
Geo-spatial datasets in the national geo-information repositories in Netherlands
To suggest a system for guided search for spatial data resources called GUESS
-Use of popular search engines like OpenSearch to help in assessing fitness for purpose
Defined fitness for purpose of data based on users (experts and non-experts in geo-informatics) satisfaction from search results
-Use metadata (information that helps users to assess the usefulness of a dataset relative to their problem) as a tool to evaluate fitness for purpose of datasets
-Their approach is based on a 3-part data model (user profile, spatial data profiles and interaction profiles)
Allowed users without specific expertise to conduct free form search requests in their own language
-Theoretical discussion on accuracy and completeness of data
Spatial On‒Line Analytical Processing (SOLAP) as a GIS data repository
To manage heterogeneous data quality and provide functions to support expert users in the assessment of the fitness for purpose of a given dataset
-Use the Quality Information Management Model = QIMM
Defined fitness for purpose as the closeness of the agreement between data characteristics and the explicit and/or implicit needs of a user for a given application in a given area
-Focus on intrinsic data quality indicators such as completeness, correctness and accuracy underpins a prototype
-Apply data quality analysis tool which is the Multidimensional User Manual (MUM) prototype
Researchers attempt to provide data quality indicators to help users determine a dataset’s fitness for purpose and better assess the fitness of data based on quality indicators/experts in GIS
-Validate the QUMM of through demonstrations of the prototype to different users (GIS scientists, specialists in data quality issues, consultants in GIS, data producers, governmental agencies, typical GIS users, etc.)
To develop the efficacy of their data model in three large healthcare organizations
-Use a two-by-two conceptual model (PSP/IQ) for describing IQ
This is a well-grounded, logical approach and a case study to indicate health organizations need to use "fitness of use" to determine IQ (specifically soundness, dependable, useful and usable information) for analytical purposes
-Focus on 8 dimensions of data quality (completeness, correctness, flexibility, etc.)
-Surveyed 45 professionals to determine which IQ dimensions belong in each quadrant of the model
This assessment of DQ provides a reasonable baseline for determining what improvements should be made in DQ based on fitness for purpose for analytical purposes
-Use case study method in 3 healthcare organizations that 75 people in each organization completed a 70-item questionnaire for assessing the quality of their patients information on the IQ dimensions
To investigate the effect of 'quality’ of information and 'amount’ of information are used in the health behaviour
-Use mathematical modelling of infectious disease transmission, seeks to analyse how the amount of information about disease prevalence affects individuals’ incentives
Demonstrated "fitness for purpose" of data for agents to choose how much information to gather from others (personal communication from an anonymous reviewer)
-More focus on data timeliness
This is a theoretical paper using several mathematical models to show that information quality affects health behaviour i.e. better information leads to better decision making
An electronic Practice Based Research Network (ePBRN) with a data repository of routinely data from multiple EHRs
To develop a matrix for assessment and management the quality of data
Their methods include 3 phases:
They used a well-designed framework to describe the intrinsic DQ (correctness and consistency) and fitness for purpose (completeness) for research and clinical purposes
(1) requirements specification based on the conceptual framework,
(2) design and establishment of the ePBRN, and
(3) evaluation of the data quality and fitness for research.
-Use Microsoft Structured Query Language (SQL) to manage the extracted data and SAS used for datacleansing and analysis
This study raised the theoretical dependence of the SQL/SAS approach on the lack of a transparent and explicit data model, metadata and process within proprietary EHRs
-Focus on correctness, completeness and consistency of clinical data
Eighteen general practices in the Exeter Primary Care Trust in UK
To compare computer-only record keeping to paper-only and hybrid systems
-Use case control study of cancer patients aged over 40 years
Defined completeness as fitness for consultation in primary care
-Classify records as paper, computer, or hybrid, depending on which medium stored the clinical information from consultations by descriptive statistics
Hybrid systems of primary care record keeping document higher numbers of consultations than computer-only or paper-only systems
-Focus on completeness of data
Many studies regularly report a range of deficiencies in the collected information for professionals requirements (Devillers et al.
2007; Kahn et al.
2002), clinical (Azaouagh and Stausberg
2008; de Lusignan et al.
2010; Mitchell and Westerduin
2008; Moro and Morsillo
2004) and health promotion (Gillies
2000b) purposes. Similar deficiencies exist with information data in geographic (Devillers et al.
2007; Ivanova et al.
2013), hospital and general practice information systems (Liaw et al.
2012), where the lack of coding rules meant that much of the data are often incomplete or in relatively inaccessible text format. The evidence is more encouraging for data for administrative purposes (Lain et al.
2008; Quan et al.
2008). Hybrid record keeping systems in primary care are believed to be more complete than computer-only or paper-only systems (Hamilton et al.
2003).
Methodologies to specify data quality for implementation
Table 5 shows that the majority of studies (81%) reported the design and development of tools to specify data quality for implementation; requirements analysis e.g. literature reviews and qualitative research methodologies (75%); system implementation, deployment and testing of information systems (25%), and descriptive evaluation (12%). There were no outcomes or comparative evaluation of the methodologies used.
Table 5
Methodologies used to specify data quality for implementation
Represent a tool to assist with continuous improvement of the use of information systems in general practice based on their requirements which is accurate information
Health information
Shows how the model can be practically used to improving the use of coding (external consistency of data) and accurate information (data correctness) within a general practice in a systematic way
This is a well-grounded, logical approach and a case study to indicate health organizations need sound, dependable, useful and usable information for analytical purposes.
Clinical data
However, there is need to some details of their participants, sampling and why focus on only 16 dimensions of Information Quality (IQ).
This approach could be applicable way for the assessment of DQ in CDM because such an assessment provides a reasonable baseline for determining what improvements should be made in DQ based on fitness for purpose for analytical purposes
They used a well-designed framework to describe the intrinsic DQ (correctness and consistency) and fitness for purpose (completeness) for research and clinical purposes
Clinical data
However, this study raised the theoretical dependence of the SQL/SAS approach on the lack of a transparent and explicit data model, metadata and process within proprietary EHRs
Their approach demonstrates that after physicians’ training, completeness, correctness and adherence to data definitions increased in ICUs significantly
Show that the overall DQ of medical registries has good quality (focusing on accuracy and completeness) and also explain their positive results as compared with earlier reports from the literature.
Clinical data
However, they did not compare data quality before and after the implementation of procedures to improve the accuracy of data
Use a mixed methodology with multiple data sources: 1. The analysis of 150 Web pages and related web sites identified the major approaches the providers use to define their
Health web pages
IQ criteria set: a. centrally defined, b. community constructed, and c. outsourced to third-party raters. 2. The researchers surveyed a convenience sample of 108 healthcare information consumers to gain better
insight into the health IQ evaluation behaviour of consumers. 3. Semi structured in-depth interviews with a sample of 20 survey participants
Use a sample of the IPL’s Q&A communication archives to identify the healthcare IQ criteria used by consumers and information intermediaries
Results show that consumers may lack the motivation or literacy skills to evaluate the information quality of health
Developing a two-by-two conceptual model for describing IQ (PSP/IQ)
Health information
Mapping the 16 IQ dimensions into their model
Survey 45 professionals to determine which IQ dimensions belong in each quadrant of the model
Case study in 3 healthcare organizations that 75 people in each organization completed a 70-item questionnaire (a 10-point Likert scale) for assessing the quality of their patients information on
Provide a reasonable baseline for determining what improvements should be made in DQ (soundness, dependable useful and usable information) based on fitness for purpose for professionals analytical purposes.
Demonstrating the efficacy of the PSP/IQ model in three large healthcare organizations
Use statistical methods to manage data quality using SAS as a computer program in statistical package
Clinical data
Measure representativeness, reliability, validity and accuracy of BEACH data eg. Reliability of coding of reasons for encounters and issues validity of ICPC to categorizing data. Accuracy of problem labels recorded by GPs (About 1000 GPs participate yearly)
Use Talend Open Studio open source software as well as developed stored procedures in SQL for the object quality criteria
Hospital dataset
Use the 6 HL7 information models for modelizing their domain
Apply the TDQM 4 steps approach to score quality of each vertex of IQT
Use two consensual resources to standardize the EHR vocabulary, include: 1) ATC: The WHO drugs and substances international classification and 2) NEWT: organisms taxonomy database
Propose methods and measures to assess data quality (focus on data accuracy)
Propose 3 dimensions to classify the quality measures proposed (objects, concepts, and terms) as vertexes of their model Information Quality Triangle = IQT)
Measure the distance between standardized information models and reference terminologies against its CIS
Allow building pertinent and coherent monitoring trends
Present that controlled vocabularies are a necessity to share data
Use ICD-10 for coding various collected data and to facilitate comparability of standardized data
Health information
Use Two broad categories of information were sought: a) epidemiological data and b) health service utilization data
Show that data management systems in hospitals were not linked to facilitate generation of cost-effectiveness estimates and other information required to compare options for health investment
Show methodological way for improvement health information quality for the economic analysis
Timeliness and data quality were assessed by calculating the percentage of reports sent on time and percentage of errors per total number of reports, respectively
Infectious disease surveillance
Use training program: 12 week prospective study with training program for reporting personnel.
Randomised selection to phone, visit or control for their supervisions
The training improved report timeliness but did not have such impact on data quality.
Use the Research Cohort database as the reference "gold standard" for the assessment of data accuracy
Infectious diseases
Use statistical test e.g.: Categorical variables were compared using Chi-square test, the Mann–Whitney test was used for the continuous variables
Compare 2 databases, one from a clinic and one from a research team to assess the quality of data (completeness and accuracy)
Results show that there is a high rate of underreporting of OIs in a routine HIV clinic database and demonstrate high rates differences between clinic and research databases
Their findings have important implications for the use and interpretation of data derived from routine HIV observational databases for research and audit, and they highlight the need for ongoing regular validation of key data items in these databases
Use a decision support example around a hypothetical patient called John who experiences an exacerbation of his COPD
Clinical Guidelines (CG) for COPD
Use the Clinical Guideline for COPD that there are 16 criteria that suggest the patient should be admitted and the model takes into account answers to each criterion
Present a model for the prediction and evaluation of quality of information to a multi criteria decision making process
Model describes a decision support tool for use in the management of COPD
Various qualitative methods such as interview and reports analysis, usually interpreted using grounded theory have been implemented to evaluate usability (Kerr et al.
2007), privacy (Stvilia et al.
2009), comparability (Kerr et al.
2007) and relevance (Kerr et al.
2007). Consistency (Chen et al.
2009) of data has been assessed with concept mapping in non-health contexts. Timeliness (currency) (Huaman et al.
2009; Kerr et al.
2007), accuracy (precision) (Stvilia et al.
2009), reliability (Britt et al.
2007), representativeness (Britt et al.
2007), correctness (Gillies
2000a) and completeness (Kiragga et al.
2011) were assessed with quantitative statistical methods.
Ontology-specified implementation to develop data quality and compare with other models
Table 6 shows two papers found that used ontological and non-ontological approaches to DQ in clinical information systems (CIS). Both papers suggested that ontology-based models had more advantages than other data models in the health domain. For example, Mabotuwana and Warren (
2009) showed the ontology driven approach to determining patients who needed a follow-up in hypertension management provided more advantages than SQL. They listed the limitations of the traditional SQL-based approach as i) lack of abstract, domain-level query support; ii) lack of the notion of a hierarchy and iii) nature of temporal SQL queries (Mabotuwana and Warren
2009). They used SWRL rules which allow user to write rules to reason about individuals and to infer new knowledge about these individuals. The ontology based approach was sufficiently flexible to enable new audit criteria to be easily added as required, easy visualization of the knowledge base and standardized ways of querying the knowledge based. However, the paper was not explicit about whether was a formal outcome-based comparison of ontological and non-ontological approaches was conducted.
Table 6
Studies that compared ontologies and other data models in specification and implementation
Enhance and facilitate temporal querying requirements in general practice medicine
Facilitate temporal querying requirements
Represent only some limitations of traditional SQL-based approach to show flexibility of ontology in easily add any requirement in ontology queries
CVD (hypertension)
Maragoudakis et al. (
2008) developed an ontology with 5 domains for a clinical Decision Support System (CDSS) for management of Chronic Obstruction Pulmonary Disease (COPD). The ontology, based on hierarchical Bayesian networks, encoded a domain (COPD) and compared the predictive accuracy of this ontology-based hierarchical Bayesian network method with linear programming and artificial neural network methods (Maragoudakis et al.
2008).
By using 10-fold cross validation and precision and recall metrics, they concluded that the Hierarchical Bayesian method is comparable to Artificial Neural Network (ANN) and far more accurate than linear programming approaches. In addition, their ontology can be easily updated with new elements, while using ANN to do this would be a painstaking laborious process. The most important advantage of such an approach, however, is the ability to shift this model to other domains, incorporating new mobile network appliances - such as GPS - and new hospitals and other health institutes, in an attempt to effectively monitor a patient in different locations.
The impact of ontologies for data quality in CDM and their evaluation
As Table 7 shows, a considerable amount of studies in this category have been published on the application of ontologies in both health and non-health areas. However, they do not compare ontologies with other data models. Studies to demonstrate the impact of ontology-based implementations included clinical decision support systems (Brüggemann and Grüning
2009; Min et al.
2009; Topalis et al.
2011) for information management (O’Donoghue et al.
2009; Young et al.
2009), diagnosis (Nimmagadda et al.
2008), clinical data analysis and management (Li and Ko
2007). A few studies examined ontology-based approaches to support data consistency (Esposito
2008a) and accuracy. However, we found no reports on any systematic and comprehensive ontological approaches to DQ issues or evaluation in the various contexts.
Table 7
The impact of implemented ontologies for the management of data quality
Ontology functions
References
Defined purpose
Assessed of fitness for purpose using DQ and findings
To detect abnormalities and malformations due to heart diseases
-Use as an ontology approach and rules to perform the instance and consistency checking and verifies that patient information violates the normal cardiovascular model loaded based on the SNOMED vocabulary
Congenital Heart Disease (CHD) dataset in Italy
-Theoretical discussion on data consistency
-Researchers show applicability of ontology to define either the anatomy of the cardiovascular system in normal patients or the anatomy characterized by malformations or abnormalities in CHD patients to support cardiologist in the identification of diseases
To provide a solution to problems around handling increasing amounts of clinical information and solves some issues related to managing large
-Simulate human body disorders into metadata through ontology based data warehouse modelling
Human body anatomy and pathology dataset in Australia
-Theoretical discussion on managing accuracy and correctness of data
-Authors states ontology can facilitate logic processes and semantics for data quality management and decision support for health care providers and clinicians
To collect/retrieve information intelligently and address the semantic heterogeneity problem from the integration of data from multiple information resources
-Apply ontology mapped with medical thesaurus to integrate and retrieve the data from two independent database systems
3000 records registered for the prostate cancer patients and Tumour Registry in US
-Theoretical discussion about data consistency
-Authors state that ontology can solve the semantic heterogeneity problem from the integration of two databases by recognition of inconsistence data
To improve the outcome of data quality management (DQM)
-Use an algorithm and data model for consistency checking, an algorithm for detecting duplicates and give three examples of DQM-specific metadata tasks (data provenance, data quality annotations at schema and instance level and an ontology for the DQM domain)
Cancer registries in Germany
-Authors mentioned the usefulness of their ontology approach to define a shared vocabulary for improved interoperability, and performing DQM include consistency checking, data duplicate detecting and metadata management
-Use ontology based model to integrate and capture the right terms (variables) and the relationships between such concepts in a disease map
Neurological disease, malaria, vector-borne diseases in Greece
-Theoretical discussion about data accuracy in multiple information sources
-Authors demonstrate the importance of capturing the right terms in ontologies to use both in the development of specific databases and, in the construction of decision support systems to control diseases for biologists, and epidemiologists
To develop a method and tool for database integration from remote sources
-Test the implemented ontology on eight different private databases with biomedical data stored in different database management packages such as MySQL, PointBase, Access, and others and provide integrated access to their data
Public genomic and clinical databases in Spain
-Use case study to retrieve information in three sources using queries and theoretical discussion on data consistency
-Authors believe that ontologies are the most suitable representation formalism for schemas in database integration system
-Represent new ontology methods for fuzzy medical relationship using taxonomical knowledge
Diabetes domain in Taiwan
-Manage accuracy of data
-Authors state that fuzzy ontology can effectively develop semantic decision making and reduce uncertainty (inaccurate data) to classify patients for medical staffs
To demonstrate the data quality benefits of integrating remote patient monitoring solutions
-Use a Body Area Network (BAN) datasets within patient EHR solutions
Three patient types are identified 1) Non-Athletic Adult, 2) Athletic Adult and 3) Child from Ireland
-Use Jade Content Ontology classes for their the Medical Knowledge Base agent
-Use 2 experiments (with/without knowledge base) for effect on risk prediction accuracy
-Focus on data accuracy and correctness
-Authors states that ontology can improve patient management through the reduction of false alarm generations and facilitate the categorisation of the data to indicate risk categories for decision support
The application of ontological approaches to data quality management addressed the following issues: data quality problems and errors (Brüggemann and Grüning
2009), data heterogeneity problem (Min et al.
2009), semantic decision making (Lee et al.
2009), efficient services (Li and Ko
2007), procedures concerning the acquisition of data (Nimmagadda et al.
2008), classification and identification of specific patients types (Lee et al.
2009; Wang et al.
2007), data collection, data sharing and data integration (Min et al.
2009; O’Donoghue et al.
2009; Perez-Rey et al.
2006; Young et al.
2009). There were no studies that examined efficiency or effectiveness of ontology-based models in DQ management.
As Table 8 represents, the second application is the use of domain ontologies for the assessment of data quality in the querying requirements (Mabotuwana and Warren
2009), extracting knowledge from natural language documents (Valencia-Garcia et al.
2008), and data expression (Preece et al.
2008). The majority of these studies used precision and recall as metrics to assess the accuracy and validate the ontological approaches (Brank et al.
2005; Brewster et al.
2004; Euzenat
2007; Gangemi et al.
2006; Li
2010; Min et al.
2009; Pathak et al.
2012a,
2012b; Spasic and Ananiadou,
2005; Stvilia et al.
2009; Valencia-Garcia et al.
2008; Wang et al.
2007).
Table 8
The impact of implemented ontologies for the assessment of data quality
-Apply an ontological tool to develop semantic data interoperability through domain terminologies using quantitative analysis of the existing coding information system and a qualitative analysis checking completeness, consistency, ambiguity and implicitness of terms
Failure, dialysis and transplant datasets from National information system in France
- Represent DQ factors such as completeness of data, appropriated terms, structured thesaurus, and terminology standard
-Authors state usefulness of ontology based approach to support the processing of texts, and extending a terminological basis for medical experts
-Use 25 patients records from various networking appliances such as mobile phones and wireless medical sensors to establish a ubiquitous environment for medical treatment of pulmonary diseases
Mobile sensor data from 25 patients in Artificial Neural Network (ANN) in GREECE
-Use ontology approach based on hierarchical Bayesian networks which can encode a domain and make prediction
-Focus on data timeliness
-Authors states the importance of ontology based model as an ubiquitous platform to improve patient monitoring and health services in real time treatment decision
Use measuring precision and recall of results to show accuracy of clinical data achieved from an ontology-based fuzzy inference agent, including a fuzzy inference engine, and a fuzzy rule base, for diabetes classification
Retrieve 392 cases from the Pima Indians diabetes database in US
-Authors state that ontology approach can classify effectively classify a person as a diabetic patient for medical staff
To develop retrieval and extract clinical information
-Represent multiple semantic relationships among concepts with UMLS ancestors through MESH descriptors in the ontology to enrich the ontology extracted from the text
Use breast cancer domain in the system with a Spanish corpus of 8649 words in Spain
-Use an experiment (4 PhD students were asked to use the system with a Spanish corpus) to analyse a software tool by measuring precision and recall of the result (accuracy of data)
-Solve semantic clinical data issues and develop accuracy of retrieval information through ontologies
To manage information quality (IQ) in a real-life example of gene expression research
- Implication of viewing high IQ as 'fitness for purpose’ for providers and consumers, in which users state their quality requirements in terms of domain concepts (such as accuracy, currency and completeness)
Gene expression data which involve the use of microarrays in UK
- Guide the development and use of metrics to measure the complexity and cohesion of ontologies
-Authors state that ontology helps to allow a practical division of the work between providers and consumers, in order to minimize the costs to all concerned
Despite a growing body of literature on ontology-based approaches in assessing the accuracy of the retrieval of clinical data, none of them have attempted to compare the performance between ontology-based and other (non-ontological) approaches. Most studies have used precision and sensitivity (recall) to assess the accuracy of ontology-based approaches in health domains (Brewster et al.
2004; Euzenat
2007; Gangemi et al.
2006; McGarry et al.
2007; Min et al.
2009; Pathak et al.
2012a,
2012b; Spasic and Ananiadou
2005; Stvilia et al.
2009; Valencia-Garcia et al.
2008; Wang et al.
2007).
Table 9 illustrates various definitions to identify the most common criteria to assess validity of ontologies and data models. Studies have attempted to define criteria such as Flexibility, Reusability, Cohesiveness, Precision, and Recall. However, there are less coordinated attempts to define other criteria such as Scalability, Completeness, Correctness, Extensibility, and Adaptability.
Table 9
Metrics to evaluate and compare ontology and traditional data model approaches
Criteria
Metrics for ontology evaluation
References
Metrics for data model evaluation
References
Flexibility
Easily adapted to multiple views in terms of parameters such as modularity, partitioning, context-boundedness
There are overlaps in the definition of criteria such as Flexibility, Scalability, Completeness, Correctness, Extensibility, and Adaptability in both ontological and non-ontological approaches. There were no guidance on the definition and scope of Reusability, Cohesiveness, Precision, and Recall in the data model approaches in the literature. Standardising these metrics can help to standardise the specification of ontologies and data models. This can then standardise the comparison of ontology and non-ontology approaches.
Discussion
This review examined the role of ontology-based approaches to develop data quality based on "fitness for purpose" in the health context. The findings updated and corroborated much of our previous work in this field and added new knowledge to ontology-based approaches to data quality and "fitness for purpose" of information systems.
How is data quality being conceptualized within the "fitness for purpose" definition for a range of uses?
We found few papers on DQ used within the definition of fitness for purpose. There are more studies on the ontologies for management of DQ (26 papers) and assessment of DQ in all contexts (11 papers). These findings support the current perception of DQ as a complex concept with many dimensions, often overlapping conceptually (Wand and Wang
1996). Liaw et al. (
2011) developed a conceptual framework for DQ that include intrinsic DQ (correctness and consistency) of data elements and fitness for purpose (completeness) of data set for research and clinical purpose.
What specification methodologies are being used to specify data quality for implementation?
The literature on the specification of data quality for implementation is fragmentary and there is not a comprehensive approach. The findings of the current study are consistent with our previous review (Liaw et al.
2013) that the ontological approach to develop DQ is poorly evaluated. However, most agreed that DQ is a multidimensional construct (Devillers et al.
2007; Nimmagadda et al.
2008); with completeness, accuracy, correctness, consistency and timeliness being the most commonly used dimensions. A few studies examined ontology-based approaches to support data consistency and accuracy. However, no research was found that formally and systematically assessed the association between ontologies for DQ and fitness for purpose in various contexts.
What ontology-specified implementations are being used and how do they compare with other methods?
There were few comparative and evaluative studies on assessment of data quality or compared ontological and non-ontological approaches to representing knowledge in clinical information systems. This literature review suggests that, compared to non-hierarchical data models, there may be more advantages and benefits in the use of ontologies to solve semantic clinical data quality issues and improve the validity and reliability of data retrieval, collection, storage, extraction and linkage algorithms and tools. Formal ontological approaches enable the systematic development of automated, valid and reliable methods to assess and manage the DQ and semantic interoperability issues (Lee et al.
2009; Valencia-Garcia et al.
2008; Verma et al.
2009,
2008). The expressiveness of ontology based models can facilitate accuracy and precision compared to non-ontology models and approaches (Esposito
2008a,
2008b; Preece et al.
2008).
Current ontological approaches have limited evaluation. There are little comparative studies in the chronic disease management domain and even less examining data quality. The challenges to the development and validation of an ontology-based model to the assessment and management of DQ include methodological immaturity, an immature knowledge base, and a lack of tools to support ontology-based design of information systems, evaluation of ontological approaches, and engagement of users in design and implementations. There are insufficient studies to define ontology evaluation metrics comprehensively and show practical techniques to evaluate ontological approaches in terms of flexibility, scalability and reusability versus non-ontology based models.
How is the impact of implementing ontology-based specifications for data quality in chronic disease management being measured and evaluated?
Current evidence demonstrates there is a lack of valid and reliable data quality assurance (Arts et al.
2003,
2002b) to ensure fitness for a range of uses by consumers, patients, health providers and professionals. This study has added to our understanding of ontology-based approaches to improve the quality of the data so it is useful for the various purposes such as clinical research, teaching, audit and evaluation. (e.g. quality assurance and clinical decision making). The main advantages of building ontologies for data quality in health are to automate the extraction of data from EHRs into clinical data warehouses; assessment and management of the intrinsic quality and completeness of this "big data" so that they are fit for purposes such as research, quality improvement and health information exchange and sharing; management of controlled vocabularies and optimising semantic interoperability; curation of data for use by human users and applications such as electronic decision support systems; mining of data to discover relationships between the concepts; discovery of new knowledge; and reuse of knowledge in the management of chronic diseases (Abidi
2011; Buranarach et al.
2009; Gedzelman et al.
2005; Gupta et al.
2003; Jara et al.
2009).
Limitations of the review
The majority of studies involved design and tools development for data models and ontologies in health area and chronic diseases rather than implementation, deployment and evaluation of the relevant procedures and tools. The trends are encouraging for ontological approaches. However, there are no formal large scale studies to systematically compare the quality of outputs of ontological to non-ontological approaches to the assessment and management of data quality and fitness for purpose of the implementations. We did not search the grey literature, an important source in this relatively immature field. However, there were also limitations of access to proprietary materials. In future investigations it might be possible to use an ontological approach to develop data quality in different administrative, financial and clinical information systems.
Managerial implication
The findings of this study have several important practical implications for developing enterprise information systems. For instance, a health organisation can determine the current status of advancement of their ontology and information model, to guide the further design of a semantic strategy and to achieve specific goals, given the current data quality in their clinical information systems (CIS). The findings of this study and our previous review may serve as a benchmark for developing an ontology model as a tool for assessing and managing data quality in clinical information systems.
Also, for the development of CIS and clinical data warehouses managers can determine which features or functions of ontology based approaches could support their health professionals and patients better. Additionally, managers can use the ontology model to develop their information system in terms of all dimensions of data quality: it can show them the major strengths and weaknesses of their quality of information in terms of supporting end users in their decision making process. This is the fitness for purpose paradigm.
Conclusion
The understanding of data quality, as a multidimensional concept applied to the data elements (intrinsic DQ) and the set of data elements (extrinsic DQ) is progressing. Ontological approaches are emerging and theoretically important to address the complex relationships among overlapping concepts in this complex area. This review has described the current published literature in this domain and points to number of directions for ongoing research into the use of ontological approaches to managing the fitness for purpose of "big data" from multiple EHRs.
Abbreviations
CDM:
Chronic disease management
DQ:
Data quality
DQM:
Data quality management
ePBRN:
The electronic practice based research network
EHR:
Electronic health records
CIS:
Clinical information system
GPS:
General practice system
OBMAS:
Ontology based multi-agent system
SNOMED CT AU:
Systematised nomenclature of medicine clinical term Australian release
MESH:
Medical subject headings
COPD:
Chronic obstructive pulmonary disease
ANN:
Artificial neural network
SWRL:
Semantic web rule language
SPARQL:
Semantic protocol and RDF query language.
Declarations
Acknowledgment
The authors would like to thank Dr Sarah Dennis and Dr Sanjyot Vagholkar for their previous and ongoing contributions in this study.
Authors’ Affiliations
(1)
UNSW School of Public Health & Community Medicine
(2)
Isfahan University of Medical Sciences, Faculty of Management and Medical Information Sciences, Health Information Technology Research Centre
(3)
UNSW Centre for Primary Health Care & Equity
(4)
SW Sydney Local Health District (SWSLHD) General Practice Unit
(5)
UNSW Asia Pacific Research Centre for Ubiquitous Healthcare
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